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1

Formic-acid-induced depolymerization of oxidized lignin to aromatics

Rahimi, Alireza, Ulbrich, Arne, Coon, Joshua J., Stahl, Shannon S.

Journal:

Year:

2014

Language:

english

File:

PDF, 397 KB

english, 2014

2

Chemical Derivatization of Peptide Carboxyl Groups for Highly Efficient Electron Transfer Dissociation

Frey, Brian L., Ladror, Daniel T., Sondalle, Samuel B., Krusemark, Casey J., Jue, April L., Coon, Joshua J., Smith, Lloyd M.

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2013

Language:

english

File:

PDF, 800 KB

english, 2013

3

The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins

Riley, Nicholas M, Sikora, Jacek W., Seckler, Henrique S., Greer, Joseph B., Fellers, Ryan T., LeDuc, Richard D., Westphall, Michael S., Thomas, Paul M., Kelleher, Neil L, Coon, Joshua J.

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 1.07 MB

english, 2018

4

Top-Down Characterization of Proteins with Intact Disulfide Bonds Using Activated-Ion Electron Transfer Dissociation

Rush, Matthew J. P., Riley, Nicholas M, Westphall, Michael S, Coon, Joshua J.

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 1.42 MB

english, 2018

5

Ultra-high pressure (>30,000 psi) packing of capillary columns enhances depth of shotgun proteomic analyses

Shishkova, Evgenia, Hebert, Alex, Westphall, Michael S., Coon, Joshua J.

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 892 KB

english, 2018

6

Single Shot Capillary Zone Electrophoresis-Mass Spectrometry Produces Over 27,000 Peptide and Nearly 4,400 Protein Identifications by Combining a Very Low-Electroosmosis Coated Capillary, a Third-Generation Electrokinetically-Pumped Sheath-Flow Nanospray Interface, an Orbitrap Fusion Lumos Tribid Mass Spectrometer, and an Advanced Peak Determination Algorithm

Zhang, Zhenbin, Hebert, Alex, Westphall, Michael, Qu, Yanyan, Coon, Joshua J., Dovichi, Norman J.

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 523 KB

english, 2018

7

Proteomic atlas of the human brain in Alzheimer's disease

McKetney, Justin, Runde, Rosie, Hebert, Alexander S., Salamat, Shahriar, Roy, Subhojit, Coon, Joshua J.

Journal:

Journal of Proteome Research

Year:

2019

Language:

english

File:

PDF, 2.15 MB

english, 2019

8

Toward defining the phosphoproteome of Xenopus laevis embryos

Jered V. McGivern, Danielle L. Swaney, Joshua J. Coon, Michael D. Sheets

Journal:

Developmental Dynamics

Year:

2009

Language:

english

File:

PDF, 677 KB

english, 2009

9

Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics

Khidekel, Nelly, Ficarro, Scott B, Clark, Peter M, Bryan, Marian C, Swaney, Danielle L, Rexach, Jessica E, Sun, Yi E, Coon, Joshua J, Peters, Eric C, Hsieh-Wilson, Linda C

Journal:

Nature Chemical Biology

Year:

2007

Language:

english

File:

PDF, 664 KB

english, 2007

10

Implementation of Electron-Transfer Dissociation on a Hybrid Linear Ion Trap−Orbitrap Mass Spectrometer

Phanstiel, Doug, Good, David M., Berggren, W. Travis, Coon, Joshua J., McAlister, Graeme C.

Journal:

Analytical Chemistry

Year:

2007

Language:

english

File:

PDF, 522 KB

english, 2007

11

Quantifying proteomes and their post-translational modifications by stable isotope label-based mass spectrometry

Merrill, Anna E, Coon, Joshua J

Journal:

Current Opinion in Chemical Biology

Year:

2013

Language:

english

File:

PDF, 861 KB

english, 2013

12

Maximal Oxidative Capacity during Exercise Is Associated with Skeletal Muscle Fuel Selection and Dynamic Changes in Mitochondrial Protein Acetylation

Overmyer, Katherine A., Evans, Charles R., Qi, Nathan R., Minogue, Catherine E., Carson, Joshua J., Chermside-Scabbo, Christopher J., Koch, Lauren G., Britton, Steven L., Pagliarini, David J., Coon, J

Journal:

Cell Metabolism

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

13

A Single Kinase Generates the Majority of the Secreted Phosphoproteome

Tagliabracci, Vincent S., Wiley, Sandra E., Guo, Xiao, Kinch, Lisa N., Durrant, Eric, Wen, Jianzhong, Xiao, Junyu, Cui, Jixin, Nguyen, Kim B., Engel, James L., Coon, Joshua J., Grishin, Nick, Pinna, L

Journal:

Year:

2015

Language:

english

File:

PDF, 3.06 MB

english, 2015

14

Activated Ion Electron Transfer Dissociation for Improved Fragmentation of Intact Proteins

Riley, Nicholas M., Westphall, Michael S., Coon, Joshua J.

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 2.57 MB

english, 2015

15

The Peripheral Blood Eosinophil Proteome

Wilkerson, Emily M., Johansson, Mats W., Hebert, Alexander S., Westphall, Michael S., Mathur, Sameer K., Jarjour, Nizar N., Schwantes, Elizabeth A., Mosher, Deane F., Coon, Joshua J.

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 2.87 MB

english, 2016

16

Now, More Than Ever, Proteomics Needs Better Chromatography

Shishkova, Evgenia, Hebert, Alexander S., Coon, Joshua J.

Journal:

Year:

2016

Language:

english

File:

PDF, 727 KB

english, 2016

17

LipiDex: An Integrated Software Package for High-Confidence Lipid Identification

Hutchins, Paul D., Russell, Jason D., Coon, Joshua J.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.56 MB

english, 2018

18

Proteomic and Phosphoproteomic Changes Induced by Prolonged Activation of Human Eosinophils with IL-3

Esnault, Stephane, Hebert, Alexander S., Jarjour, Nizar N., Coon, Joshua J., Mosher, Deane F.

Journal:

Journal of Proteome Research

Year:

2018

Language:

english

File:

PDF, 1.19 MB

english, 2018

19

Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics

McCool, Elijah N., Lodge, Jean M., Basharat, Abdul Rehman, Liu, Xiaowen, Coon, Joshua J., Sun, Liangliang

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2019

File:

PDF, 3.52 MB

2019

20

Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes

Leung, Kevin K., Wilson, Gary M., Kirkemo, Lisa L., Riley, Nicholas M., Coon, Joshua J., Wells, James A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.73 MB

2020

21

Established Biomarkers of Chronic Obstructive Pulmonary Disease Reflect Skeletal Muscle Integrityâs Response to Exercise in an Animal Model of Pulmonary Emphysema

Balnis, Joseph, Vincent, Catherine E., Jones, Alyssa J., Drake, Lisa A., Coon, Joshua J., Lee, Chun Geun, Elias, Jack A., Singer, Harold A., Jaitovich, Ariel

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2020

File:

PDF, 765 KB

2020

22

Survival Following Traumatic Brain Injury in Drosophila Is Increased by Heterozygosity for a Mutation of the NF-ÎºB Innate Immune Response Transcription Factor Relish

Swanson, Laura C., Trujillo, Edna A., Thiede, Gene H., Katzenberger, Rebeccah J., Shishkova, Evgenia, Coon, Joshua J., Ganetzky, Barry, Wassarman, David A.

Journal:

Year:

2020

File:

PDF, 11.18 MB

2020

23

Infrared Photoactivation Reduces Peptide Folding and Hydrogen-Atom Migration following ETD Tandem Mass Spectrometry

Aaron R. Ledvina, Graeme C. McAlister, Myles W. Gardner, Suncerae I. Smith, James A. Madsen, Jae C. Schwartz, George C. Stafford Jr., John E. P. Syka, Jennifer S. Brodbelt, Joshua J. Coon

Journal:

Angewandte Chemie

Year:

2009

Language:

english

File:

PDF, 312 KB

english, 2009

24

Infrared Photoactivation Reduces Peptide Folding and Hydrogen-Atom Migration following ETD Tandem Mass Spectrometry

Aaron R. Ledvina, Graeme C. McAlister, Myles W. Gardner, Suncerae I. Smith, James A. Madsen, Jae C. Schwartz, George C. Stafford Jr., John E. P. Syka, Jennifer S. Brodbelt, Joshua J. Coon

Journal:

Angewandte Chemie International Edition

Year:

2009

Language:

english

File:

PDF, 312 KB

english, 2009

25

Electrophoretic methods for analysis of urinary polypeptides in IgA-associated renal diseases

Bruce A. Julian, Stefan Wittke, Jan Novak, David M. Good, Joshua J. Coon, Markus Kellmann, Petra Zürbig, Eric Schiffer, Marion Haubitz, Zina Moldoveanu, Shannon M. Calcatera, Robert J. Wyatt, Josef Sý

Journal:

ELECTROPHORESIS

Year:

2007

Language:

english

File:

PDF, 494 KB

english, 2007

26

Laser desorption-atmospheric pressure chemical ionization: a novel ion source for the direct coupling of polyacrylamide gel electrophoresis to mass spectrometry

Joshua J. Coon, Heather A. Steele, Philip J. Laipis, W. W. Harrison

Journal:

Journal of Mass Spectrometry

Year:

2002

Language:

english

File:

PDF, 161 KB

english, 2002

27

Capillary electrophoresis–mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: An update of recent developments

Harald Mischak, Joshua J. Coon, Jan Novak, Eva M. Weissinger, Joost P. Schanstra, Anna F. Dominiczak

Journal:

Mass Spectrometry Reviews

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

28

Ion–ion reactions with fixed-charge modified proteins to produce ions in a single, very high charge state

Brian L. Frey, Casey J. Krusemark, Aaron R. Ledvina, Joshua J. Coon, Peter J. Belshaw, Lloyd M. Smith

Journal:

International Journal of Mass Spectrometry

Year:

2008

Language:

english

File:

PDF, 711 KB

english, 2008

29

Protein digestion and phosphopeptide enrichment on a glass microchip

Guihua Eileen Yue, Michael G. Roper, Catherine Balchunas, Abigail Pulsipher, Joshua J. Coon, Jeffery Shabanowitz, Donald F. Hunt, James P. Landers, Jerome P. Ferrance

Journal:

Analytica Chimica Acta

Year:

2006

Language:

english

File:

PDF, 299 KB

english, 2006

30

The utility of ETD mass spectrometry in proteomic analysis

Leann M. Mikesh, Beatrix Ueberheide, An Chi, Joshua J. Coon, John E.P. Syka, Jeffrey Shabanowitz, Donald F. Hunt

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2006

Language:

english

File:

PDF, 1015 KB

english, 2006

31

Electron Transfer Dissociation of Peptide Anions

Joshua J. Coon, Jeffrey Shabanowitz, Donald F. Hunt, John E.P. Syka

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2005

Language:

english

File:

PDF, 165 KB

english, 2005

32

Post-Acquisition ETD Spectral Processing for Increased Peptide Identifications

David M. Good, Craig D. Wenger, Graeme C. McAlister, Dina L. Bai, Donald F. Hunt, Joshua J. Coon

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2009

Language:

english

File:

PDF, 574 KB

english, 2009

33

The human urinary proteome reveals high similarity between kidney aging and chronic kidney disease

Petra Zürbig, Stéphane Decramer, Mohammed Dakna, Justyna Jantos, David M. Good, Joshua J. Coon, Flavio Bandin, Harald Mischak, Jean-Loup Bascands, Joost P. Schanstra

Journal:

Year:

2009

Language:

english

File:

PDF, 673 KB

english, 2009

34

The effect of interfering ions on search algorithm performance for electron-transfer dissociation data

David M. Good, Craig D. Wenger, Joshua J. Coon

Journal:

Year:

2010

Language:

english

File:

PDF, 158 KB

english, 2010

35

COMPASS: A suite of pre- and post-search proteomics software tools for OMSSA

Craig D. Wenger, Douglas H. Phanstiel, M. Violet Lee, Derek J. Bailey, Joshua J. Coon

Journal:

Year:

2011

Language:

english

File:

PDF, 328 KB

english, 2011

36

Clinical proteomics: A need to define the field and to begin to set adequate standards

Harald Mischak, Rolf Apweiler, Rosamonde E. Banks, Mark Conaway, Joshua Coon, Anna Dominiczak, Jochen H. H. Ehrich, Danilo Fliser, Mark Girolami, Henning Hermjakob, Denis Hochstrasser, Joachim Jankows

Journal:

PROTEOMICS - Clinical Applications

Year:

2007

Language:

english

File:

PDF, 191 KB

english, 2007

37

Discovery and validation of urinary biomarkers for prostate cancer

Dan Theodorescu, Eric Schiffer, Hartwig W. Bauer, Friedrich Douwes, Frank Eichhorn, Reinhard Polley, Thomas Schmidt, Wolfgang Schöfer, Petra Zürbig, David M. Good, Joshua J. Coon, Harald Mischak

Journal:

PROTEOMICS - Clinical Applications

Year:

2008

Language:

english

File:

PDF, 528 KB

english, 2008

38

CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics

Joshua J. Coon, Petra Zürbig, Mohammed Dakna, Anna F. Dominiczak, Stéphane Decramer, Danilo Fliser, Moritz Frommberger, Igor Golovko, David M. Good, Stefan Herget-Rosenthal, Joachim Jankowski, Bruce A

Journal:

PROTEOMICS - Clinical Applications

Year:

2008

Language:

english

File:

PDF, 380 KB

english, 2008

39

Intellinsity: a tool for visualization and analysis of liquid chromatography/tandem mass spectrometry sampling events

Qiangwei Xia, David M. Good, Craig D. Wenger, Joshua J. Coon

Journal:

Rapid Communications in Mass Spectrometry

Year:

2010

Language:

english

File:

PDF, 107 KB

english, 2010

40

Atmospheric pressure laser desorption/chemical ionization mass spectrometry: a new ionization method based on existing themes

Joshua J. Coon, Kevin J. McHale, W. W. Harrison

Journal:

Rapid Communications in Mass Spectrometry

Year:

2002

Language:

english

File:

PDF, 138 KB

english, 2002

41

Characterization and Diagnostic Value of Amino Acid Side Chain Neutral Losses Following Electron-Transfer Dissociation

Qiangwei Xia, M. Violet Lee, Christopher M. Rose, Alyce J. Marsh, Shane L. Hubler, Craig D. Wenger, Joshua J. Coon

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2011

Language:

english

File:

PDF, 507 KB

english, 2011

42

Implementing Photodissociation in an Orbitrap Mass Spectrometer

Lisa A. Vasicek, Aaron R. Ledvina, Jared Shaw, Jens Griep-Raming, Michael S. Westphall, Joshua J. Coon, Jennifer S. Brodbelt

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2011

Language:

english

File:

PDF, 407 KB

english, 2011

43

Anion dependence in the partitioning between proton and electron transfer in ion/ion reactions

Joshua J. Coon, John E.P. Syka, Jae C. Schwartz, Jeffrey Shabanowitz, Donald F. Hunt

Journal:

International Journal of Mass Spectrometry

Year:

2004

Language:

english

File:

PDF, 217 KB

english, 2004

44

In vacuo formation of peptide–metal coordination complexes

Graeme C. McAlister, Sharon E.B. Kiessel, Joshua J. Coon

Journal:

International Journal of Mass Spectrometry

Year:

2008

Language:

english

File:

PDF, 354 KB

english, 2008

45

Peptide and Protein Quantification Using iTRAQ with Electron Transfer Dissociation

Doug Phanstiel, Yi Zhang, Jarrod A. Marto, Joshua J. Coon

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2008

Language:

english

File:

PDF, 681 KB

english, 2008

46

Decision tree–driven tandem mass spectrometry for shotgun proteomics

Swaney, Danielle L, McAlister, Graeme C, Coon, Joshua J

Journal:

Year:

2008

Language:

english

File:

PDF, 404 KB

english, 2008

47

Cascade Dissociations of Peptide Cation-Radicals. Part 2. Infrared Multiphoton Dissociation and Mechanistic Studies ofz-Ions from Pentapeptides

Aaron R. Ledvina, Thomas W. Chung, Renjie Hui, Joshua J. Coon, Frantisek Tureček

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2012

Language:

english

File:

PDF, 905 KB

english, 2012

48

Characterizing Peptide Neutral Losses Induced by Negative Electron-Transfer Dissociation (NETD)

Neil G. Rumachik, Graeme C. McAlister, Jason D. Russell, Derek J. Bailey, Craig D. Wenger, Joshua J. Coon

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2012

Language:

english

File:

PDF, 754 KB

english, 2012

49

Cascade Dissociations of Peptide Cation-Radicals. Part 1. Scope and Effects of Amino Acid Residues in Penta-, Nona-, and Decapeptides

Thomas W. Chung, Renjie Hui, Aaron Ledvina, Joshua J. Coon, Frantisek Tureček

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

50

Dual Electrospray Ion Source for Electron-Transfer Dissociation on a Hybrid Linear Ion Trap−Orbitrap Mass Spectrometer

Williams,, D. Keith, McAlister, Graeme C., Good, David M., Coon, Joshua J., Muddiman, David C.

Journal:

Analytical Chemistry

Year:

2007

Language:

english

File:

PDF, 180 KB

english, 2007